m3resp.DataModelStore#

class m3resp.DataModelStore[source]#

A dict-of-id-to-entity table per entity type, plus relational lookups.

Methods

`add_breath`
`add_case`
`add_clinical_event`
`add_data_file`
`add_derived_feature`
`add_device`
`add_eit_configuration`
`add_emg_channel`
`add_processing_run`	Store and return a processing run after checking its file references.
`add_quality_annotation`
`add_session`
`add_signal_stream`
`add_ventilator_setting`
`annotations_for_target`
`features_for_run`
`files_for_signal`
`has_quality_annotation_target`	Return whether a quality annotation target exists in this store.
`runs_for_file`
`sessions_for_case`
`streams_for_session`

add_breath(breath)[source]#

Parameters:: breath (Breath)
Return type:: Breath

add_case(case)[source]#

Parameters:: case (Case)
Return type:: Case

add_clinical_event(event)[source]#

Parameters:: event (ClinicalEvent)
Return type:: ClinicalEvent

add_data_file(data_file)[source]#

Parameters:: data_file (DataFile)
Return type:: DataFile

add_derived_feature(feature)[source]#

Parameters:: feature (DerivedFeature)
Return type:: DerivedFeature

add_device(device)[source]#

Parameters:: device (Device)
Return type:: Device

add_eit_configuration(config)[source]#

Parameters:: config (EITConfiguration)
Return type:: EITConfiguration

add_emg_channel(channel)[source]#

Parameters:: channel (EMGChannel)
Return type:: EMGChannel

add_processing_run(run)[source]#

Store and return a processing run after checking its file references.

Parameters:: run (ProcessingRun) – Run whose input and array-results file identifiers must already appear in data_files. An existing run with the same identifier is replaced.
Returns:: The supplied run, stored under its identifier.
Return type:: ProcessingRun
Raises:: DataModelStoreError – If any referenced file record is missing.

add_quality_annotation(annotation)[source]#

Parameters:: annotation (QualityAnnotation)
Return type:: QualityAnnotation

add_session(session)[source]#

Parameters:: session (RecordingSession)
Return type:: RecordingSession

add_signal_stream(stream)[source]#

Parameters:: stream (SignalStream)
Return type:: SignalStream

add_ventilator_setting(setting)[source]#

Parameters:: setting (VentilatorSetting)
Return type:: VentilatorSetting

annotations_for_target(target_type, target_id)[source]#

Parameters:

target_type (str)
target_id (str)

Return type:

list[QualityAnnotation]

features_for_run(processing_run_id)[source]#

Parameters:: processing_run_id (str)
Return type:: list[DerivedFeature]

files_for_signal(signal_id)[source]#

Parameters:: signal_id (str)
Return type:: list[DataFile]

has_quality_annotation_target(target_type, target_id)[source]#

Return whether a quality annotation target exists in this store.

Parameters:

target_type (str)
target_id (str)

Return type:

bool

runs_for_file(file_id)[source]#

Parameters:: file_id (str)
Return type:: list[ProcessingRun]

sessions_for_case(case_id)[source]#

Parameters:: case_id (str)
Return type:: list[RecordingSession]

streams_for_session(session_id)[source]#

Parameters:: session_id (str)
Return type:: list[SignalStream]